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1. #Xquartz 2.7.7 yosemite mac os
2. #Xquartz 2.7.7 yosemite install
3. #Xquartz 2.7.7 yosemite mac
4. #Xquartz 2.7.7 yosemite windows

But usingĭYLD_LIBRARY_PATH fixed the problem.

#Xquartz 2.7.7 yosemite install

Without the rx3d and cython args the install seemed to hang at compiling ctng but I'll deal with that later.įor some unknown and puzzling reason, various attempts to solve the readline problem using LD_LIBRARY_PATH and copying $HOME/anaconda/lib/libreadline.6.2.dylib to various places within the NEURON installation folder did not fix the problem. nrn/configure -prefix=/Applications/NEURON-7.4/nrn -with-paranrn=dynamic -with-nrnpython=dynamic BUILD_RX3D=0 have_cython=no -with-readline=no I built the 7.4 version from the latest repository sources using: So that nrniv -python would import spicy, etc. The latest 7.3 NEURON dmg on the alpha site had no problems with readline but I did need aĮxport LD_LIBRARY_PATH=$HOME/anaconda/lib I also installed openmpi-1.8.4 with a last step of 'sudo make install'Īfter installing openmpi the first time I had problems with some of the shared libraries, maybe from the previous installation, butĪnd a re-install made it work (but also had to reinstall hg since that was the only other thing in /usr/local.

#Xquartz 2.7.7 yosemite windows

Nowadays the X11 preferences for windows allows one to select "focus follows mouse" and I installed xquartz 2.7.7 and command line tools.

#Xquartz 2.7.7 yosemite mac

I reproduced the readline problem by upgrading an extra partition on my mac air from Mavericks to Yosimite and installing Anaconda.

#Xquartz 2.7.7 yosemite mac os

# Libtool was configured on host `(hostname || uname -n) 2>/dev/null | sed 1q`:Įxport DYLD_LIBRARY_PATH=$HOME/anaconda/libįix the problem? Are you using the new Yosemite mac os x? $configure_input"Īc_sed_conf_input=`$as_echo "$configure_input" | # Let's still pretend it is `configure' which instantiates (i.e., don'tĬonfigure_input="$ac_file. # on some systems where configure will not decide to define it. Set X /bin/sh './nrn/configure' '-prefix=/Applications/NEURON-7.3/nrn' '-with-iv=/Applications/NEURON-7.3/iv' '-with-nrnpython=dynamic' '-with-paranrn=dynamic' $ac_configure_extra_args -no-create -no-recursion nrn/configure, generated by GNU Autoconf 2.69,Īc_configure_extra_args="$ac_configure_extra_args -silent" # configure, is in config.log if it exists.Ĭonfigured by. # Compiler output produced by configure, useful for debugging usr/lib/libc++.1.dylib (compatibility version 1.0.0, current version 120.0.0)Ĭode: Select all # Generated by configure. usr/lib/libncurses.5.4.dylib (compatibility version 5.4.0, current version 5.4.0) usr/lib/libedit.3.dylib (compatibility version 2.0.0, current version 3.0.0) usr/lib/libgcc_s.1.dylib (compatibility version 1.0.0, current version 283.0.0)Ĭode: Select all kjb:~ ken$ otool -L `which nrniv` usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version 1213.0.0) usr/lib/libstdc++.6.dylib (compatibility version 7.0.0, current version 104.1.0) Users/ken/local/x86_64/lib/libIVhines.3.dylib (compatibility version 4.0.0, current version 4.3.0) Libreadline.6.2.dylib (compatibility version 6.0.0, current version 6.2.0) Applications/NEURON-7.3/nrn/x86_64/lib/libsundials.0.dylib (compatibility version 1.0.0, current version 1.0.0) Applications/NEURON-7.3/nrn/x86_64/lib/libsparse13.0.dylib (compatibility version 1.0.0, current version 1.0.0) Applications/NEURON-7.3/nrn/x86_64/lib/libscopmath.0.dylib (compatibility version 1.0.0, current version 1.0.0)

Applications/NEURON-7.3/nrn/x86_64/lib/libneuron_gnu.0.dylib (compatibility version 1.0.0, current version 1.0.0) Applications/NEURON-7.3/nrn/x86_64/lib/libmeschach.0.dylib (compatibility version 1.0.0, current version 1.0.0) Applications/NEURON-7.3/nrn/x86_64/lib/libmemacs.0.dylib (compatibility version 1.0.0, current version 1.0.0) Applications/NEURON-7.3/nrn/x86_64/lib/libivoc.0.dylib (compatibility version 1.0.0, current version 1.0.0)

Applications/NEURON-7.3/nrn/x86_64/lib/libnrniv.0.dylib (compatibility version 1.0.0, current version 1.0.0) Applications/NEURON-7.3/nrn/x86_64/lib/liboc.0.dylib (compatibility version 1.0.0, current version 1.0.0)

Applications/NEURON-7.3/nrn/x86_64/lib/libnrnoc.0.dylib (compatibility version 1.0.0, current version 1.0.0) Applications/NEURON-7.3/nrn/x86_64/lib/libnrnpython1013.0.dylib (compatibility version 1.0.0, current version 1.0.0) anaconda/lib/python2.7/site-packages/neuron/hoc.so: Code: Select all kjb:~ ken$ otool -L //anaconda/lib/python2.7/site-packages/neuron/hoc.so